桃NF‑Y基因家族成员鉴定及果实发育期表达分析

Identification of NF-Y gene family members and expression analysis during fruit development in Prunus persica

  • 摘要: 核因子Y(nuclear factor Y, NF-Y) 也被称为血红素激活蛋白(heme activator protein, HAP)或CCAAT结合因子(CCAAT-binding factor, CBF),在植物生长发育中起着关键作用,而关于桃基因家族的系统性研究较为匮乏。基于“中油14号”桃全基因组数据筛选获得桃NF-Y基因家族成员,利用生物信息学方法对其进化关系、染色体分布、蛋白理化性质与基因结构进行系统分析。同时,利用qRT-PCR技术检测PpNF-Y基因家族在“中油14号”桃果实不同发育时期的表达水平。结果显示,在桃全基因组中共鉴定到24个NF-Y基因,不均匀地分布在8条染色体上,其编码蛋白含121~366个氨基酸,分为3个亚族,均含有NF-Y保守基序。qRT-PCR分析结果显示,24个PpNF-Y基因在“中油14号”桃果实发育过程中呈现差异化表达模式:PpNF-YA4、PpNF-YA9和PpNF-YB8基因表达水平呈现先升后降;PpNF-YA3等14个基因表达水平随果实发育持续降低;PpNF-YC2和PpNF-YC3.2基因表达水平在果实发育后期显著上调;PpNF-YA7等4个基因在整个果实发育期表达水平无显著差异。该研究结果为后续进一步研究其在桃果实成熟过程中的功能奠定了基础。

     

    Abstract: Nuclear factor Y (NF-Y), also known as heme activator protein (HAP) or CCAAT-binding factor (CBF), plays pivotal roles in plant growth and development. However, systematic studies on the NF-Y gene family in peach (Prunus persica) remain scarce. The NF-Y gene family members were identified from the genome-wide data of peach cultivar "Zhongyou 14", and comprehensive bioinformatics analyses were performed on their phylogenetic relationships, chromosomal distribution, protein physicochemical properties, and gene structures. Furthermore, the expression profiles of PpNF-Y genes at different fruit developmental stages of "Zhongyou 14" were examined using quantitative real-time PCR (qRT-PCR). A total of 24 PpNF-Y gene family members were identified in the peach genome, unevenly distributed across eight chromosomes, encoding proteins of 121-366 amino acids. These members were classified into three subfamilies, all of which contained conserved NF-Y motifs. Expression analysis revealed thatthe 24 PpNF-Y genes exhibited differential expression patterns during fruit development in the peach cultivar "Zhongyou 14". Among them, PpNF-YA4, PpNF-YA9, and PpNF-YB8 showed a biphasic expression trend, with transcript levels initially increasing and then decreasing. Fourteen genes, including PpNF-YA3, displayed a continuous decline in expression throughout fruit development. In contrast, PpNF-YC2 and PpNF-YC3.2 were significantly up-regulated at the later stages of fruit development. Meanwhile, four genes, including PpNF-YA7, exhibited no significant changes in expression levels across the entire fruit developmental period. These findings provide a foundation for further studies on the functional roles of these genes in peach fruit ripening.

     

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