茶树GELP基因家族的鉴定与表达分析

Identification and Expression Analysis of GELP Gene Family in Camellia Sinensis

  • 摘要: 从拟南芥数据库中获得GELP基因家族注册号, 运用生物信息学分析的方法, 在茶树数据库中得到了GELP基因家族成员86个, 这些基因可分为9个亚族.其编码蛋白的氨基酸数为171~753, 理论等电点为4.35~9.48, 蛋白质分子量为18.594 19~84.550 54 kDa。基因结构分析表明, 有3条基因只有2个外显子, 其余基因外显子数3~13。对上游2 kb区域启动子顺式作用元件分析表明, 该基因家族成员对逆境胁迫应答MYB响应明显, 除CsGELP16、CsGELP24、CsGELP56、CsGELP61、CsGELP77、CsGELP80外, 其他基因均对抗寒元件识别位点MYC响应明显。转录组数据分析表明, CsGELP79、CsGELP64、CsGELP86、CsGELP4分别在Cold、PEG、NaCl、MeJA等处理下上调显著, 表明基因CsGELP79响应寒冷胁迫, CsGELP64响应干旱胁迫, CsGELP86响应高盐胁迫, CsGELP4响应抵抗病虫害。此外, CsGELP1、CsGELP12、CsGELP14、CsGELP15、CsGELP18、CsGELP32、CsGELP55在各种处理下均表现为下调, 说明这些基因在抗逆胁迫中起负调节作用。

     

    Abstract: The Arabidopsis GELP genes were used as queries and 86 GELP gene members, which can be divided into 8 subgroups, were obtained from the tea plant. The amino acids of the encoding proteins were 171~753, the theoretical isoelectric points were 4.35~9.48, and the molecular weights were 18.594 19~84.550 54 kDa. Gene structure analysis showed that most members have 3~13 exons. Several cis-elements were identified in the promoter regions of the CsGELP genes that are important in regulating growth, development, light responses and the response to several stresses. Most members contain the MYB and MYC elements, which are in volved in responses to salt and cold-stresses. Transcriptome analysis showed that the expressions of CsGELP79, CsGELP64, CsGELP86, and CsGELP4 were enhanced in cold, PEG, NaCl, and MeJA treaments, respectively, indicating that CsGELP79 strongly responded to Cold stress, CsGELP64 strongly responded to drought stress, CsGELP86 strongly responded to high salt stress, and CsGELP4 strongly responded to disease and insect resistance. In addition, CsGELP1, CsGELP12, CsGELP14, CsGELP15, CsGELP18, CsGELP32, CsGELP55 were all down-regulated under various treatments, suggesting that these genes play a negative regulatory role in stress responses.

     

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