周棋赢, 姜慧敏, 李拉拉, 袁红雨, 张瑞娇, 王仪佳. 茶树异胡豆苷合成酶基因的全基因组鉴定和表达分析[J]. 信阳师范学院学报(自然科学版), 2021, 34(4): 596-605. DOI: 10.3969/j.issn.1003-0972.2021.04.015
引用本文: 周棋赢, 姜慧敏, 李拉拉, 袁红雨, 张瑞娇, 王仪佳. 茶树异胡豆苷合成酶基因的全基因组鉴定和表达分析[J]. 信阳师范学院学报(自然科学版), 2021, 34(4): 596-605. DOI: 10.3969/j.issn.1003-0972.2021.04.015
Qiying ZHOU, Huimin JIANG, Lala LI, Hongyu YUAN, Ruijiao ZHANG, Yijia WANG. Genome-wide Identification and Expression Analysis of Strictosidine Synthase Gene in Tea Plant[J]. Journal of Xinyang Normal University (Natural Science Edition), 2021, 34(4): 596-605. DOI: 10.3969/j.issn.1003-0972.2021.04.015
Citation: Qiying ZHOU, Huimin JIANG, Lala LI, Hongyu YUAN, Ruijiao ZHANG, Yijia WANG. Genome-wide Identification and Expression Analysis of Strictosidine Synthase Gene in Tea Plant[J]. Journal of Xinyang Normal University (Natural Science Edition), 2021, 34(4): 596-605. DOI: 10.3969/j.issn.1003-0972.2021.04.015

茶树异胡豆苷合成酶基因的全基因组鉴定和表达分析

Genome-wide Identification and Expression Analysis of Strictosidine Synthase Gene in Tea Plant

  • 摘要: 基于隐马可夫模型检索和序列比对,从茶树基因组鉴定出17个异胡豆苷合成酶(Strictosidine synthase,STR)基因(CsSTR1~17).理化分析表明,CsSTR蛋白长度在147~552个氨基酸之间,分子量介于15.6~60.8 kD,等电点介于4.65~10.88,除CsSTR3、4、9、10、11和13,其他CsSTR都为亲水性蛋白.物种进化分析结果表明,CsSTR3、4、10、11、12、13、14与蛇根木、萝芙木、长春花和喜树中的STR位于同一进化分支;但进化关系较近的CsSTR基因间,其内含子数目和长度、蛋白保守基序的数量和类型不同.表达分析结果显示,CsSTR基因表达受低温、干旱、盐胁迫以及茉莉酸甲酯调控,大部分CsSTR基因在顶芽、成熟叶和根中具有较高的表达量.启动子分析结果表明,CsSTR基因启动子区含有许多与生长发育和逆境反应相关的元件.ERF、MYB、Zinc Finger、bZIP家族转录因子是与CsSTR基因启动子结合较多的蛋白.

     

    Abstract: Based on the Hidden-Markov model searching and sequence alignment, 17 STRs (CsSTR1~17) were identified from the tea plant genome. Physicochemical analysis showed that CsSTR proteins was 147 to 552 amino acids in length, with molecular weight from 15.6 to 60.8 kD, and isoelectric point from 4.65 to 10.88. Except CsSTR3, 4, 9, 10, 11 and 13, the other CsSTR proteins were hydrophilic. Phylogenetic analysis showed that CsSTR3, 4, 10, 11, 12, 13, 14 were located in the same evolutionary branch as the STRs from Rauvolfia serpentine, Rauvolfia verticillata, Catharanthus roseus and Camptotheca acuminata, respectively. However, the number and length of CsSTR gene introns and the number and conserved CsSTR protein motifs were different among CsSTR genes with close evolutionary relationship. Expression analysis showed that CsSTR gene expression was regulated by low temperature, drought and salt stresses and methyl jasmonate, most CsSTR genes were highly expressed in apical bud, mature leaf and root. Cis-elements related to growth, development and stress response were abundant in the promoter regions of CsSTR genes. ERF, MYB, Zinc Finger, and bZIP transcription factors were protein families which had lots of binding sites in the CsSTR gene promoters.

     

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